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mpi_heat_conduction_solution.cpp
468 lines (413 loc) · 16.3 KB
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mpi_heat_conduction_solution.cpp
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#include<Kokkos_Core.hpp>
#include<mpi.h>
template <class ExecSpace>
struct SpaceInstance {
static ExecSpace create() { return ExecSpace(); }
static void destroy(ExecSpace&) {}
static bool overlap() { return false; }
};
#ifndef KOKKOS_ENABLE_DEBUG
#ifdef KOKKOS_ENABLE_CUDA
template <>
struct SpaceInstance<Kokkos::Cuda> {
static Kokkos::Cuda create() {
cudaStream_t stream;
cudaStreamCreate(&stream);
return Kokkos::Cuda(stream);
}
static void destroy(Kokkos::Cuda& space) {
cudaStream_t stream = space.cuda_stream();
cudaStreamDestroy(stream);
}
static bool overlap() {
bool value = true;
auto local_rank_str = std::getenv("CUDA_LAUNCH_BLOCKING");
if (local_rank_str) {
value = (std::stoi(local_rank_str) == 0);
}
return value;
}
};
#endif
#endif
struct CommHelper {
MPI_Comm comm;
// Num MPI ranks in each dimension
int nx, ny, nz;
// My rank
int me;
// My pos in proc grid
int x, y, z;
// Neighbor Ranks
int up,down,left,right,front,back;
CommHelper(MPI_Comm comm_) {
comm = comm_;
int nranks;
MPI_Comm_size(comm, &nranks);
MPI_Comm_rank(comm, &me);
nx = std::pow(1.0*nranks,1.0/3.0);
while(nranks%nx != 0) nx++;
ny = std::sqrt(1.0*(nranks/nx));
while((nranks/nx)%ny != 0) ny++;
nz = nranks/nx/ny;
x = me%nx;
y = (me/nx)%ny;
z = (me/nx/ny);
left = x==0 ?-1:me-1;
right = x==nx-1?-1:me+1;
down = y==0 ?-1:me-nx;
up = y==ny-1?-1:me+nx;
front = z==0 ?-1:me-nx*ny;
back = z==nz-1?-1:me+nx*ny;
printf("NumRanks: %i Me: %i Grid: %i %i %i MyPos: %i %i %i\n",nranks,me,nx,ny,nz,x,y,z);
printf("Me: %i MyNeighs: %i %i %i %i %i %i\n",me,left,right,down,up,front,back);
}
template<class ViewType>
void isend_irecv(int partner, ViewType send_buffer, ViewType recv_buffer, MPI_Request* request_send, MPI_Request* request_recv) {
MPI_Irecv(recv_buffer.data(), recv_buffer.size(), MPI_DOUBLE, partner, 1, comm, request_recv);
MPI_Isend(send_buffer.data(), send_buffer.size(), MPI_DOUBLE, partner, 1, comm, request_send);
}
};
struct System {
// Using theoretical physicists way of describing system,
// i.e. we stick everything in as few constants as possible
// be i and i+1 two timesteps dt apart:
// T(x,y,z)_(i+1) = T(x,y,z)_(i)+dT(x,y,z)*dt;
// dT(x,y,z) = q * sum_dxdydz( T(x+dx,y+dy,z+dz) - T(x,y,z) )
// If its surface of the body add:
// dT(x,y,z) += -sigma*T(x,y,z)^4
// If its z==0 surface add incoming radiation energy
// dT(x,y,0) += P
// Communicator
CommHelper comm;
MPI_Request mpi_requests_recv[6];
MPI_Request mpi_requests_send[6];
int mpi_active_requests;
// size of system
int X,Y,Z;
// Local box
int X_lo, Y_lo, Z_lo;
int X_hi, Y_hi, Z_hi;
// number of timesteps
int N;
// interval for print
int I;
// Temperature and delta Temperature
Kokkos::View<double***> T, dT;
// Halo data
using buffer_t = Kokkos::View<double**,Kokkos::LayoutLeft, Kokkos::CudaSpace>;
buffer_t T_left, T_right, T_up, T_down, T_front, T_back;
buffer_t T_left_out, T_right_out, T_up_out, T_down_out, T_front_out, T_back_out;
Kokkos::DefaultExecutionSpace E_left, E_right, E_up, E_down, E_front, E_back, E_bulk;
// Initial temperature
double T0;
// timestep width
double dt;
// thermal transfer coefficient
double q;
// thermal radiation coefficient (assume Stefan Boltzmann law P = sigma*A*T^4
double sigma;
// incoming power
double P;
// init_system
System(MPI_Comm comm_): comm(comm_) {
mpi_active_requests = 0;
X = Y = Z = 200;
X_lo = Y_lo = Z_lo = 0;
X_hi = Y_hi = Z_hi = X;
N = 10000;
I = 100;
T = Kokkos::View<double***>();
dT = Kokkos::View<double***>();
T0 = 0.0;
dt = 0.1;
q = 1.0;
sigma = 1.0;
P = 1.0;
E_left = SpaceInstance<Kokkos::DefaultExecutionSpace>::create();
E_right = SpaceInstance<Kokkos::DefaultExecutionSpace>::create();
E_up = SpaceInstance<Kokkos::DefaultExecutionSpace>::create();
E_down = SpaceInstance<Kokkos::DefaultExecutionSpace>::create();
E_front = SpaceInstance<Kokkos::DefaultExecutionSpace>::create();
E_back = SpaceInstance<Kokkos::DefaultExecutionSpace>::create();
E_bulk = SpaceInstance<Kokkos::DefaultExecutionSpace>::create();
}
void destroy_exec_spaces() {
SpaceInstance<Kokkos::DefaultExecutionSpace>::destroy(E_left);
SpaceInstance<Kokkos::DefaultExecutionSpace>::destroy(E_right);
SpaceInstance<Kokkos::DefaultExecutionSpace>::destroy(E_front);
SpaceInstance<Kokkos::DefaultExecutionSpace>::destroy(E_back);
SpaceInstance<Kokkos::DefaultExecutionSpace>::destroy(E_up);
SpaceInstance<Kokkos::DefaultExecutionSpace>::destroy(E_down);
SpaceInstance<Kokkos::DefaultExecutionSpace>::destroy(E_bulk);
}
void setup_subdomain() {
int dX = (X+comm.nx-1)/comm.nx;
X_lo = dX*comm.x;
X_hi = X_lo + dX;
if(X_hi>X) X_hi=X;
int dY = (Y+comm.ny-1)/comm.ny;
Y_lo = dY*comm.y;
Y_hi = Y_lo + dY;
if(Y_hi>Y) Y_hi=Y;
int dZ = (Z+comm.nz-1)/comm.nz;
Z_lo = dZ*comm.z;
Z_hi = Z_lo + dZ;
if(Z_hi>Z) Z_hi=X;
printf("My Domain: %i (%i %i %i) (%i %i %i)\n",comm.me,X_lo,Y_lo,Z_lo,X_hi,Y_hi,Z_hi);
T = Kokkos::View<double***>("System::T", X_hi - X_lo, Y_hi - Y_lo, Z_hi - Z_lo);
dT = Kokkos::View<double***>("System::dT", T.extent(0), T.extent(1), T.extent(2));
// incoming halos
if(X_lo != 0) T_left = buffer_t("System::T_left" , Y_hi - Y_lo, Z_hi - Z_lo);
if(X_hi != X) T_right = buffer_t("System::T_right", Y_hi - Y_lo, Z_hi - Z_lo);
if(Y_lo != 0) T_down = buffer_t("System::T_down" , X_hi - X_lo, Z_hi - Z_lo);
if(Y_hi != Y) T_up = buffer_t("System::T_up" , X_hi - X_lo, Z_hi - Z_lo);
if(Z_lo != 0) T_front = buffer_t("System::T_front", X_hi - X_lo, Y_hi - Y_lo);
if(Z_hi != Z) T_back = buffer_t("System::T_back" , X_hi - X_lo, Y_hi - Y_lo);
// outgoing halo
if(X_lo != 0) T_left_out = buffer_t("System::T_left_out" , Y_hi - Y_lo, Z_hi - Z_lo);
if(X_hi != X) T_right_out = buffer_t("System::T_right_out", Y_hi - Y_lo, Z_hi - Z_lo);
if(Y_lo != 0) T_down_out = buffer_t("System::T_down_out" , X_hi - X_lo, Z_hi - Z_lo);
if(Y_hi != Y) T_up_out = buffer_t("System::T_up_out" , X_hi - X_lo, Z_hi - Z_lo);
if(Z_lo != 0) T_front_out = buffer_t("System::T_front_out", X_hi - X_lo, Y_hi - Y_lo);
if(Z_hi != Z) T_back_out = buffer_t("System::T_back_out" , X_hi - X_lo, Y_hi - Y_lo);
}
void print_help() {
printf("Options (default):\n");
printf(" -X IARG: (%i) num elements in X direction\n", X);
printf(" -Y IARG: (%i) num elements in Y direction\n", Y);
printf(" -Z IARG: (%i) num elements in Z direction\n", Z);
printf(" -N IARG: (%i) num timesteps\n", N);
printf(" -I IARG: (%i) print interval\n", I);
printf(" -T0 FARG: (%lf) initial temperature\n", T0);
printf(" -dt FARG: (%lf) timestep size\n", dt);
printf(" -q FARG: (%lf) thermal conductivity\n", q);
printf(" -sigma FARG: (%lf) thermal radiation\n", sigma);
printf(" -P FARG: (%lf) incoming power\n", P);
}
// check command line args
bool check_args(int argc, char* argv[]) {
for(int i=1; i<argc; i++) {
if(strcmp(argv[i],"-h")==0) { print_help(); return false; }
}
for(int i=1; i<argc; i++) {
if(strcmp(argv[i],"-X")==0) X = atoi(argv[i+1]);
if(strcmp(argv[i],"-Y")==0) Y = atoi(argv[i+1]);
if(strcmp(argv[i],"-Z")==0) Z = atoi(argv[i+1]);
if(strcmp(argv[i],"-N")==0) N = atoi(argv[i+1]);
if(strcmp(argv[i],"-I")==0) I = atoi(argv[i+1]);
if(strcmp(argv[i],"-T0")==0) T0 = atof(argv[i+1]);
if(strcmp(argv[i],"-dt")==0) dt = atof(argv[i+1]);
if(strcmp(argv[i],"-q")==0) q = atof(argv[i+1]);
if(strcmp(argv[i],"-sigma")==0) sigma = atof(argv[i+1]);
if(strcmp(argv[i],"-P")==0) P = atof(argv[i+1]);
}
setup_subdomain();
return true;
}
// run_time_loops
void timestep() {
Kokkos::Timer timer;
double old_time = 0.0;
for(int t=0; t<=N; t++) {
if(t>N/2) P = 0.0;
pack_T_halo();
compute_inner_dT();
exchange_T_halo();
compute_surface_dT();
Kokkos::fence();
double T_ave = compute_T();
T_ave/=1e-9*(X * Y * Z);
if((t%I == 0 || t==N) && (comm.me==0)) {
double time = timer.seconds();
printf("%i T=%lf Time (%lf %lf)\n",t,T_ave,time,time - old_time);
old_time = time;
}
}
}
// Compute inner update
struct ComputeInnerDT {};
KOKKOS_FUNCTION
void operator() (ComputeInnerDT, int x, int y, int z) const {
double dT_xyz = 0.0;
double T_xyz = T(x,y,z);
dT_xyz += q * (T(x-1,y ,z ) - T_xyz);
dT_xyz += q * (T(x+1,y ,z ) - T_xyz);
dT_xyz += q * (T(x ,y-1,z ) - T_xyz);
dT_xyz += q * (T(x ,y+1,z ) - T_xyz);
dT_xyz += q * (T(x ,y ,z-1) - T_xyz);
dT_xyz += q * (T(x ,y ,z+1) - T_xyz);
dT(x,y,z) = dT_xyz;
}
void compute_inner_dT() {
using policy_t = Kokkos::MDRangePolicy<Kokkos::Rank<3>,ComputeInnerDT,int>;
int myX = T.extent(0);
int myY = T.extent(1);
int myZ = T.extent(2);
Kokkos::parallel_for("ComputeInnerDT", Kokkos::Experimental::require(policy_t(E_bulk,{1,1,1},{myX-1,myY-1,myZ-1}),Kokkos::Experimental::WorkItemProperty::HintLightWeight), *this);
};
// Compute non-exposed surface
// Dispatch makes sure that we don't hit elements twice
enum {left,right,down,up,front,back};
template<int Surface>
struct ComputeSurfaceDT {};
template<int Surface>
KOKKOS_FUNCTION
void operator() (ComputeSurfaceDT<Surface>, int i, int j) const {
int NX = T.extent(0);
int NY = T.extent(1);
int NZ = T.extent(2);
int x, y, z;
if(Surface == left) { x = 0; y = i; z = j; }
if(Surface == right) { x = NX-1; y = i; z = j; }
if(Surface == down) { x = i; y = 0; z = j; }
if(Surface == up) { x = i; y = NY-1; z = j; }
if(Surface == front) { x = i; y = j; z = 0; }
if(Surface == back) { x = i; y = j; z = NZ-1; }
double dT_xyz = 0.0;
double T_xyz = T(x,y,z);
// Heat conduction to inner body
if(x > 0) dT_xyz += q * (T(x-1,y ,z ) - T_xyz);
if(x < NX-1) dT_xyz += q * (T(x+1,y ,z ) - T_xyz);
if(y > 0) dT_xyz += q * (T(x ,y-1,z ) - T_xyz);
if(y < NY-1) dT_xyz += q * (T(x ,y+1,z ) - T_xyz);
if(z > 0) dT_xyz += q * (T(x ,y ,z-1) - T_xyz);
if(z < NZ-1) dT_xyz += q * (T(x ,y ,z+1) - T_xyz);
// Heat conduction with Halo
if(x == 0 && X_lo != 0) dT_xyz += q * (T_left(y ,z ) - T_xyz);
if(x == (NX-1) && X_hi != X) dT_xyz += q * (T_right(y ,z ) - T_xyz);
if(y == 0 && Y_lo != 0) dT_xyz += q * (T_down(x ,z ) - T_xyz);
if(y == (NY-1) && Y_hi != Y) dT_xyz += q * (T_up(x ,z ) - T_xyz);
if(z == 0 && Z_lo != 0) dT_xyz += q * (T_front(x ,y ) - T_xyz);
if(z == (NZ-1) && Z_hi != Z) dT_xyz += q * (T_back(x ,y ) - T_xyz);
// Incoming Power
if(x == 0 && X_lo == 0) dT_xyz += P;
// thermal radiation
int num_surfaces = ( (x==0 && X_lo == 0) ? 1 : 0)
+( (x==(NX-1) && X_hi == X) ? 1 : 0)
+( (y==0 && Y_lo == 0) ? 1 : 0)
+( (y==(NY-1) && Y_hi == Y) ? 1 : 0)
+( (z==0 && Z_lo == 0) ? 1 : 0)
+( (z==(NZ-1) && Z_hi == Z) ? 1 : 0);
dT_xyz -= sigma * T_xyz * T_xyz * T_xyz * T_xyz * num_surfaces;
dT(x,y,z) = dT_xyz;
}
void pack_T_halo() {
mpi_active_requests = 0;
int mar = 0;
if(X_lo != 0) {
Kokkos::deep_copy(E_left, T_left_out ,Kokkos::subview(T,0,Kokkos::ALL,Kokkos::ALL));
mar++;
}
if(Y_lo != 0) {
Kokkos::deep_copy(E_down, T_down_out ,Kokkos::subview(T,Kokkos::ALL,0,Kokkos::ALL));
mar++;
}
if(Z_lo != 0) {
Kokkos::deep_copy(E_front,T_front_out,Kokkos::subview(T,Kokkos::ALL,Kokkos::ALL,0));
mar++;
}
if(X_hi != X) {
Kokkos::deep_copy(E_right,T_right_out,Kokkos::subview(T,X_hi-X_lo-1,Kokkos::ALL,Kokkos::ALL));
mar++;
}
if(Y_hi != Y) {
Kokkos::deep_copy(E_up ,T_up_out, Kokkos::subview(T,Kokkos::ALL,Y_hi-Y_lo-1,Kokkos::ALL));
mar++;
}
if(Z_hi != Z) {
Kokkos::deep_copy(E_back, T_back_out, Kokkos::subview(T,Kokkos::ALL,Kokkos::ALL,Z_hi-Z_lo-1));
mar++;
}
}
void exchange_T_halo() {
int mar = 0;
if(X_lo != 0) {
E_left.fence();
comm.isend_irecv(comm.left,T_left_out,T_left,&mpi_requests_send[mar],&mpi_requests_recv[mar]);
mar++;
}
if(Y_lo != 0) {
E_down.fence();
comm.isend_irecv(comm.down,T_down_out,T_down,&mpi_requests_send[mar],&mpi_requests_recv[mar]);
mar++;
}
if(Z_lo != 0) {
E_front.fence();
comm.isend_irecv(comm.front,T_front_out,T_front,&mpi_requests_send[mar],&mpi_requests_recv[mar]);
mar++;
}
if(X_hi != X) {
E_right.fence();
comm.isend_irecv(comm.right,T_right_out,T_right,&mpi_requests_send[mar],&mpi_requests_recv[mar]);
mar++;
}
if(Y_hi != Y) {
E_up.fence();
comm.isend_irecv(comm.up,T_up_out,T_up,&mpi_requests_send[mar],&mpi_requests_recv[mar]);
mar++;
}
if(Z_hi != Z) {
E_back.fence();
comm.isend_irecv(comm.back,T_back_out,T_back,&mpi_requests_send[mar],&mpi_requests_recv[mar]);
mar++;
}
mpi_active_requests = mar;
}
void compute_surface_dT() {
using policy_left_t = Kokkos::MDRangePolicy<Kokkos::Rank<2>,ComputeSurfaceDT<left>,int>;
using policy_right_t = Kokkos::MDRangePolicy<Kokkos::Rank<2>,ComputeSurfaceDT<right>,int>;
using policy_down_t = Kokkos::MDRangePolicy<Kokkos::Rank<2>,ComputeSurfaceDT<down>,int>;
using policy_up_t = Kokkos::MDRangePolicy<Kokkos::Rank<2>,ComputeSurfaceDT<up>,int>;
using policy_front_t = Kokkos::MDRangePolicy<Kokkos::Rank<2>,ComputeSurfaceDT<front>,int>;
using policy_back_t = Kokkos::MDRangePolicy<Kokkos::Rank<2>,ComputeSurfaceDT<back>,int>;
int X = T.extent(0);
int Y = T.extent(1);
int Z = T.extent(2);
if(mpi_active_requests>0) {
MPI_Waitall(mpi_active_requests,mpi_requests_send,MPI_STATUSES_IGNORE);
MPI_Waitall(mpi_active_requests,mpi_requests_recv,MPI_STATUSES_IGNORE);
}
Kokkos::parallel_for("ComputeSurfaceDT_Left" , Kokkos::Experimental::require(policy_left_t (E_left, {0,0},{Y,Z}),Kokkos::Experimental::WorkItemProperty::HintLightWeight),*this);
Kokkos::parallel_for("ComputeSurfaceDT_Right", Kokkos::Experimental::require(policy_right_t(E_right, {0,0},{Y,Z}),Kokkos::Experimental::WorkItemProperty::HintLightWeight),*this);
Kokkos::parallel_for("ComputeSurfaceDT_Down", Kokkos::Experimental::require(policy_down_t (E_down, {1,0},{X-1,Z}),Kokkos::Experimental::WorkItemProperty::HintLightWeight),*this);
Kokkos::parallel_for("ComputeSurfaceDT_Up", Kokkos::Experimental::require(policy_up_t (E_up, {1,0},{X-1,Z}),Kokkos::Experimental::WorkItemProperty::HintLightWeight),*this);
Kokkos::parallel_for("ComputeSurfaceDT_front", Kokkos::Experimental::require(policy_front_t(E_front, {1,1},{X-1,Y-1}),Kokkos::Experimental::WorkItemProperty::HintLightWeight),*this);
Kokkos::parallel_for("ComputeSurfaceDT_back", Kokkos::Experimental::require(policy_back_t (E_back, {1,1},{X-1,Y-1}),Kokkos::Experimental::WorkItemProperty::HintLightWeight),*this);
}
// Some compilers have deduction issues if this were just a tagged operator
// So did a full Functor here instead
struct ComputeT {
Kokkos::View<double***> T, dT;
double dt;
ComputeT(Kokkos::View<double***> T_, Kokkos::View<double***> dT_, double dt_):T(T_),dT(dT_),dt(dt_){}
KOKKOS_FUNCTION
void operator() (int x, int y, int z, double& sum_T) const {
sum_T += T(x,y,z);
T(x,y,z) += dt * dT(x,y,z);
}
};
double compute_T() {
using policy_t = Kokkos::MDRangePolicy<Kokkos::Rank<3>,Kokkos::IndexType<int>>;
int X = T.extent(0);
int Y = T.extent(1);
int Z = T.extent(2);
double my_T;
Kokkos::parallel_reduce("ComputeT", Kokkos::Experimental::require(policy_t(E_bulk, {0,0,0},{X,Y,Z}),Kokkos::Experimental::WorkItemProperty::HintLightWeight), ComputeT(T,dT,dt), my_T);
double sum_T;
MPI_Allreduce(&my_T,&sum_T,1,MPI_DOUBLE,MPI_SUM,comm.comm);
return sum_T;
}
};
int main(int argc, char* argv[]) {
MPI_Init(&argc,&argv);
Kokkos::initialize(argc,argv);
{
System sys(MPI_COMM_WORLD);
if(sys.check_args(argc,argv))
sys.timestep();
sys.destroy_exec_spaces();
}
Kokkos::finalize();
MPI_Finalize();
}